From: Association study in the 5q31-32 linkage region for schizophrenia using pooled DNA genotyping
SNP ID | Position | Gene name▲ | Type* | Pooling p-value | Total sample (N trios) | Frequency children | Frequency parents | T/NT | χ2 | Individual genotyping total sample p-value | Individual genotyping 300 trios pool p-value |
---|---|---|---|---|---|---|---|---|---|---|---|
rs17169180 | 135188954 | LOC153328 | C/A | 0.008 | 613 | 0.14 | 0.15 | 142/176 | 3.64 | 0.06 | 0.20 |
rs1859430 | 135258412 | IL9 | T/C | 0.04 | 599 | 0.19 | 0.20 | 177/203 | 1.78 | 0.18 | 0.14 |
rs30747 | 135366739 | TGFBI | C/A | 0.04 | 590 | 0.05 | 0.05 | 60/58 | 0.03 | 0.85 | 0.28 |
rs7715300 | 135456919 | TGFBI | C/A | 0.03 | 612 | 0.06 | 0.08 | 64/108 | 11.26 | 0.001 | 0.18 |
rs2906066 | 141560461 | - | T/C | 0.05 | 589 | 0.14 | 0.13 | 122/145 | 1.98 | 0.16 | 0.57 |
rs7443175 | 141675612 | SPRY4 | T/C | 0.03 | 612 | 0.23 | 0.25 | 239/200 | 3.46 | 0.06 | 0.36 |
rs6897690 | 141681136 | SPRY4 | A/G | 0.008 | 615 | 0.22 | 0.24 | 255/209 | 4.56 | 0.03 | 0.0006 |
rs153423 | 141794129 | - | C/T | 0.05 | 611 | 0.21 | 0.20 | 180/202 | 1.27 | 0.26 | 0.46 |