Skip to main content

Table 4 Information for studied SNPs in HaploReg and Regulome DB

From: Functional polymorphisms and transcriptional analysis in the 5′ region of the human serotonin receptor 1B gene (HTR1B) and their associations with psychiatric disorders

Variant

Promoter/enhancer histone marks

Regulatory motifs altered

rs4140535

12_EnhBiv

5 altered motifs BATF_disc3, GATA_disc3, STAT_known11 etc.

rs1778258

12_EnhBiv, 2_PromU,23_PromBiv

CTCF,Rad21,TR4

rs17273700

12_EnhBiv, 2_PromU,23_PromBiv

7 altered motifs Ahr::Arnt::HIF, BHLHE40_disc2, HEY1_disc2 etc.

rs1228814

12_EnhBiv, 2_PromU,23_PromBiv

8 altered motifs CCNT2_disc2, Ets_disc1, PLAG1 etc.

rs11568817

3_PromD1, 12_EnhBiv, 2_PromU,23_PromBiv

 

rs130058

3_PromD1, 12_EnhBiv, 2_PromU,23_PromBiv

9 altered motifs GCNF, Nr2f2, RXRA_known1 etc.